Annotated gene sequence
Experiment = in vivo icSHAPE / NAI-N3
RefSeq = hg38
Cell = HEK293T
Original Data Reference = Cell. 2016;165(5):1267-1279.
stable secondary structure
loop
bulge/internal loop
no SHAPE data
coding sequence
GTTGGAGGCGCAGAAGCCGAGCCGGGCCGGCCGGGCGGGCGGGGAGGAGGAGGAGCCGGGCGGGCTGGCGGGCGGCCGGGTGGCGGCGGCGGCATGGCGG
AGCCGAGCGGGGCCGAGACGAGGCCCCCCATTCGGGTCACCGTCAAGACCCCCAAGGACAAGGAGGAAATTGTGATCTGCGATCGAGCCTCGGTCAAGGA
GTTCAAAGAGGAAATCTCCCGGAGGTTTAAGGCTCAGCAGGATCAGCTGGTCCTGATCTTCGCAGGCAAGATCCTCAAGGATGGGGACACACTGAACCAG
CACGGAATCAAGGACGGGCTCACTGTCCATCTGGTCATCAAGACCCCTCAGAAGGCTCAAGATCCAGCTGCTGCCACTGCTTCTTCCCCCTCCACACCTG
ACCCTGCCTCAGCACCCTCCACCACGCCTGCTTCACCCGCCACCCCTGCCCAGCCCTCCACCTCTGGCAGTGCCTCTTCAGATGCTGGCAGTGGAAGCCG
GAGGAGCAGTGGTGGGGGGCCCTCTCCGGGGGCTGGGGAGGGATCCCCCAGTGCTACTGCGTCCATACTCTCTGGCTTTGGGGGCATCCTGGGGCTGGGC
AGCCTAGGCCTGGGCTCTGCCAACTTCATGGAGCTGCAGCAGCAGATGCAGCGGCAGCTGATGTCCAATCCTGAGATGCTGTCACAGATCATGGAGAACC
CCCTGGTCCAGGATATGATGTCTAACCCTGATCTGATGCGTCACATGATTATGGCCAACCCCCAGATGCAGCAGTTGATGGAGCGGAACCCTGAGATCAG
CCACATGCTCAATAACCCTGAACTCATGAGGCAGACAATGGAGCTTGCTCGGAATCCAGCCATGATGCAAGAGATGATGCGGAACCAGGACCGGGCCCTG
AGCAACCTTGAGAGCATCCCTGGAGGGTATAATGCCCTCCGCCGCATGTACACGGACATCCAGGAGCCCATGTTCAGTGCTGCCCGGGAACAGTTTGGCA
ACAATCCCTTCTCTTCCCTGGCCGGGAACTCCGACAGCTCATCCTCCCAGCCTCTGCGGACTGAGAATCGAGAGCCCCTCCCTAACCCCTGGAGCCCCTC
GCCCCCCACCTCCCAGGCCCCCGGGTCCGGTGGGGAGGGCACCGGAGGATCGGGGACCAGCCAGGTGCACCCGACAGTCTCGAACCCCTTTGGGATCAAT
GCGGCTAGCCTGGGGTCAGGGATGTTCAATAGCCCAGAAATGCAAGCCCTCCTCCAGCAGATCTCTGAGAACCCCCAGCTGATGCAGAATGTGATCTCAG
CACCCTACATGCGCAGCATGATGCAGACGCTTGCCCAGAACCCCGACTTTGCTGCTCAGATGATGGTGAATGTGCCGCTCTTCGCGGGGAACCCCCAACT
GCAGGAGCAGCTCCGCCTGCAGCTCCCAGTCTTCCTGCAGCAGATGCAGAACCCAGAGTCACTCTCCATCCTTACCAATCCCCGAGCCATGCAGGCATTG
CTGCAGATCCAGCAGGGACTACAGACCTTGCAGACCGAGGCCCCTGGGCTGGTACCCAGCCTTGGCTCCTTTGGGATATCCCGGACCCCAGCACCCTCAG
CAGGCAGCAACGCAGGGTCTACGCCCGAGGCCCCCACTTCCTCACCAGCCACGCCAGCCACATCTTCTCCAACAGGGGCTTCCAGCGCCCAGCAGCAACT
CATGCAGCAGATGATCCAGCTTTTGGCTGGAAGTGGAAACTCACAGGTGCAGACGCCAGAAGTGAGATTTCAGCAGCAGCTGGAGCAGCTCAACTCCATG
GGCTTCATCAATCGTGAGGCTAACCTGCAGGCCCTGATTGCCACAGGAGGGGACATCAACGCAGCTATCGAGAGACTGCTGGGCTCCCAGCTCTCCTAAT
CCCTCGGCCCATGCCTCCTGCCTCTCCCCTCCCTCGATGTCAGCATTCGGTTCTTCTGTCAATCCTTACCCTCTGCAGCTTGTCCTCCCTTCCGTCTTCT
CCCTCATCCTTTCCAAACAGCAGGGTGACTTTAGAGGCATGGGCTCCAACCCCTTAGCTCTGTCTGAGAATTATGGTTTTACTGCTACGTCTCTAACAGA
CTCTTCTCTCCTGGTCTCCTTGAGCAGTGCTACTTAAACAGTTTTCACAGTTTCATTGATTGACTCTACCTCCTTGCCCCACACCACTTTTGCAATCTTT
AAACTTTCAGTGGCTGTGCAGAGTCGAGGGAGGAACCAGCTCTCTGGTTTACTGGAACATAGTCTTCCATCTATACCACTAGGGTTTTGTCTTATGTTTA
CTTTTGGTAACTCTCTTCCTTCTTTTTCTCCCTACCCCCCAACCCCTAGCCCAACCAATGCTAGAATTTCTTGCTCTGAAGGAGGAGCAGGTGAAACAGG
TGGTAATTTTCCTTCTCGGCCCCTATTCTGGTTCATTCAGCACTTTTTGGTGGGAACTGTTGGAAATTCCAGGGTAAGGAGGAAGATGCCTGTTCTCCCT
GTCTGAAGAGGGAGATGAGACAGCTCTCTGGACAGGAATTAACAAACGCTGGAGCAGCCCAGAGGAAATTCGTGTGAAAGAGGAGGGAATGAGATTATTC
GGAGGAAGGGAATGGGGGAGACAGCCTGAGTAAAAGGCTTGGAAGTTGGAATTAACAGTGGGGAGCAGAAGCACTCATAGCTCTTTTAGGCAGAAGAATC
CAGGCCCGAGCTGGCAGAAGAGACTTAGAGATGCTAATGGAATTTAAACTGAAAAAAGGAGCCCAATGAAGCTAAGCGCCACGCCCCACAAGGGGTCATA
TTGGCTTTAGTTCCTCAAGCATATGTGCTTATATGCACACACACACACATTTCCATGGACCCAGGTCTTGCTTGTGTCCCCAGGCACCAGTAGTTTGAGC
CCCCCTCAAAAGACATGAAGGGGGTTGGGGTCTGTGTGAGTAGTGGGGAGGTGCATGTGTATCCACATGTGTGCATACACTCTTAAGTTGGGTGGGAAGT
GGATTCCTTGTTGGTTTCTGGTTCAGAGTGCTCTCCCACCACCAGAGACAAGTGGGTAAAAAGGTCAGTCCATTGCAGGAATATATATCCGGGAGAGCTA
GGTCCCTTGGGGCTCTGGATGCTGGGTAACCCAGAGGTAATGTGGGTACCCTTTCTGAAGCTGTCAGGGCTGTGACTAGCACCCTTATCACCCCTCACTG
CCTTGTGGGAATAGTAGAGGGTTTTTTTCCTCCAGAGCCCCTGGCCTTTCAGTTCTTAACTATTTCCCTCCAGGCCAGAAAGTTTTCTTTGAGGAAGGAG
AGGAGAGGGTGGCAATGATGCCTTTGATCTGGAATTGGACATTTCTCTGTCAGAGCACAGAGGAGGCTCATATCACCTCTTCCCTCTCCTACTTGGCCCA
GCTGCTTGGAGGACCGACCCCATGGCTGAGAATATGACGGCAAGAGGAACAGAGTTTGCTCCAAGTGGGAAAGGGTCCCAAGCAGTCCAGAGAAGATGTC
TGTGTGGCTTTCCCTCCCTGCCTCCCCCAGCTCCCACACTGGCCTTTGTAAATAAATGGCGTGGTCTTTGTTGTGA