Annotated gene sequence

GGACGCGGGACCCGTACAGCGGCCTCCGCCGCACCGGGACAGCAGCCGCCGCCGCTGCCGCCGTCCTCCCCTGTCTACCCGGAGCTGTCTCGAGCTGAGC
CCCCTACCGGGCCGGATCCCGAGATAAAGCCTAGCCATGGCTGCTGTTTATTCTGGCATTTCCCTTAAGCTTAAAAGCAAGACAACTTCCTGGGAAGATA
AACTAAAACTAGCTCACTTTGCTTGGATTTCTCACCAGTGCTTTCTTCCAAATAAAGAACAAGTGTTACTTGATTGGGCAAGACAATCATTGGTTGCATT
TTATAAGAAAAAGCTTGAACTGAAGGAAGATATTGTTGAAAGGCTTTGGATCTATATAGATAACATTTTACATAGCAGAAAATTGCAGAATCTCCTCAAG
AATGGAAAGACCATTAATCTTCAGATTTCCCTAGTCAAGATCATCAATGAGAGAGTAGCTGAGTTCTCTCTTTCGGGATCCCAAAGAAACATCTGTGCTG
TCCTTCGATGTTGCCAGGGCATCCTGTCGACACCTGCCCTGGCTGTCATCTACACGGCCAAACAGGAGCTGATGGTGGCCTTGCTGAGCCAGCTTTGCTG
GTCGGCCTGCAGGCAGCCCGAAGGAGCTGTGGTAGCCCAGTTGTTTGAGGTCATTCACCTGGCCCTTGGCCATTATCTCTTGATCCTGCAGCAGCAGGTC
AACCCAAGACGTGCCTTTGGGGATGTGACTGCTCACCTGCTCCAGCCGTGCCTGGTCCTGAGGCACTTACTCTCTGGGGGCACATGGACGCAGGCTGGCC
AGGGCCAGCTGAGGCAGGTGCTGAGCCGGGACATCAGGAGTCAGATTGAGGCCATGTTCCGAGGAGGGATTTTTCAGCCTGAGCTACTGTCATCCTACAA
GGAGGGGCTCTTGGACCAGCAGCAAGGGGATGTGAAGACGGGAGCCATGAAGAACCTTCTGGCTCCCATGGACACCGTGCTTAACAGGCTGGTTGATGCT
GGCTACTGTGCAGCATCCCTTCATACCTCTGTTGTGGCCAACTCAGTGGCCTTGCTGTATAAGCTCTTTCTAGATTCTTACTTTAAGGAGGGAAACCAGC
TTCTCTGCTTCCAGGTTCTCCCCAGGTTGTTTGGCTGCTTGAAGATTTCACACCTGCAGGAGGAGCAGAGCAAAGCCCTGTCCACATCAGATTGGACCAC
AGAGCTTTTGGTTGTGGAACAGCTACTAAACTCAGTGGCCAACAACAATATCTACAACATCGCTGCCGACAGAATTCGGCACGAAGAGGCTCAGTTCCGC
TTTTACCGCCACGTGGCTGAGCTGCTGATAAACCATGCACAAGCACCCATACCGGCCTGGTTCCGCTGTCTGAAGACTTTGATATCTCTGAATCATTTGA
TTTTGGAGCCAGACCTGGATGACCTGCTGGCTTCAGCGTGGATCGATGCCGAGGTAACAGAGTTTCGAACCAAAAAAGCCCAGGAGGCGCTTATTCGTAC
TGTCTTCCAGACTTATGCCAAACTCCGACAAGTGCCACGGTTGTTTGAAGAGGTTTTGGGGGTGATCTGTCGTCCAGCTGCTGAGGCACTGAGGCAGCCT
GTGCTGGCCTCGGGCCCCTCCACGGTACTCTCTGCATGCCTCCTGGAGCTGCCTCCAAGTCAGATCCTGGACACGTGGTCCCTTGTGCTGGAGAAGTTCC
AGTCTTTAGTCTTGCCCTATTTGCAGAGTGATGCCGACATGGCCCTGAAATCACTGTCACTGAGCTTGCTGCTGCACTGCATCATGTTCAACATGAGGAG
CCTGGACAGCAGCACGCCTCTGCCCATTGTCAGACGGACACAGTGCATGATGGAGAGGATGATGAGGGAGCTCGTGCAGCCCCTGCTGGCCCTTCTCCCG
GACACCCCAGGCCCAGAGCCAGAGCTGTGGCTGCAGAAGGTCAGTGACTCTGTGCTCCTGCTCTCTTACACTTGGGCCCAGGTGGACGCTATGTTCAGTT
TGAACTGTAGCCAGTATCACTCTATGTCTGGGCCCCTTATAGGTGTTGCTCTGGAGATCTCGAACCTCCCTTCGTTGCTCCCAGGTGTAAAAACACAGCA
TTGGAAGAAGATAGAGAAGTTTACAGCTCAGTTCAGCTCTCTTGGTACATATTGCTTAGAACAGCTGTACCTGCAGAAAATGAAAAGGACTTTAATGCAA
ACTAGTTTCCGGTCTGAAGGAGCCATCCAAAGTTTGAGGTGCGATGCTGCCTTTATTATTGGTTCCGGCAGAAAAAGCTTGAATCAGAGAACGACGGCTT
CCTGGGATGGCCAAGTTGGGATGGTGAGTGGACTCACATACCCTGTAGCACACTGGCACTTGATTGTGTCAAATCTCACAATTTTAATATCCTATCTGTG
TCCAGATGATGTGGGATACCTGGCCAGTGTCCTGCTGAGAACTTTACCCATGGGCAAAGCCCAGGAAGTCTCAATAGATGAAGAGGCATACATCACACTG
GAAAAAATATCCAAAGCCTTCCTTCATAGCCCTCTCTTTCCAGAGATGCAGTCCCTTCATTCTGCTTTCTTAACGTGCGTAACCACAAGTTGCTCCAGCA
TTCTGTGTTCTGGTGCCCAGCGTGACTCAGGTCTTGTCAGTCAGCAGCTTCCCTGGCTTTTTGAAAAGGACCACATGGTTGTGGGTCATTGGGAAAACAG
ATTTGCAAAAGCTGGACCCGAAGGTATAGAACCTAGAGGAGAAATTGCCCAGAACTTACTGTCCCTGGTCAAGAGTGACTTCCCTATCCAGCTGGAGGGA
GAGCAGTTGGAAAGCATCCTGGGGCTTTTGGAAGTGATTTCTGCCTTACAGCTGGACAGCCTCTTGCCACCCTATCATGTGCATTATTTTCTTGTGTTAC
TGTCCATGGCCGTCACCAAACTAGGATGCTCTTGCTCCTCCTCACTGGCTCTCAAGTTCTTGACGACTTGCTACCAACTTCTTGGTTACTTGCAAAAGGG
GAAAAGTGCTCGCTCTGTGTTCAAGATCATGTATGGTAGTGATATTTTTGAGGTTGTACTGACCTCATTGTTCAGAGCTAGTAGTAGGTTCCTTATTGAG
ATGGATGATCCCGCTTGGCTGGAATTCCTCCAAGTGATAGGGACGTTCTTAGAGGAGCTAATGCAGATGCTCATCCAAATGAAGCTGAGCTTGGTGCTCA
ATTTTAGAAAAATCACCGCATTCCTCTCTAGTTCCAAACCATACACGGAGGCAGCTTCAAGCAAACAATTAGAAAATCAGAACCCCCAGGGCAGGCAGCT
CCTTCTGGTGTCTTTAACCAGGTTGTGCCATGTCCTGGGACCTTTCCTCAAAGAGCAGAAGCTGGGCCAAGAGGCCCCAGCAGCACTGTCTGAGCTGCTG
CAGCAGGTTGTGCTGCAGACAGGAGCTGTGCTGCAGCTCTGCTCAGTGCCGGGGGCCCGGGGCTGGCGCCTTCCCTCGGTCCTCATCTCATCCGTCAGCA
CGCTCTTGGAAGCCGACCTGGGTCAGCACTGCAGGGATGGAGGGGCCGACATTTCCCAAGGAAGCGACAGGACGCTGCTCTCCCATGTTGCCCTCTACCA
GGGTGTTTACTCTCAGATACTGTTGGAGTTGCCAGCTCTCGCGGGACATGATCAGTCTTTTCAGGCAGCCTTGCAGTTTTTGACTCTGTTCTTTTTGGCC
CCAGAACTGCATCCCAAAAAGGACTCCGTGTTTACCTCCATGTTTCATTCTGTGAGAAGAGTTCTTGCAGATCCTGAAATTCCTGTTCAGGTCACTCAGG
ATATTGAGCCTCATTTGGGAGCCTTGTTCACCCAAATGTTAGAGGTTGGGACGACAGAGGACTTGAGGCTGGTGATGCAGTGTATTCTCCAGGGACTGGA
TGTCAGTAACATGTGGAAAGCAGATGTGCAGGCTGTTGTGTCAGCTGTTACACTGCTGAGGCTGCTACTGAACTGCCCACTCAGTGGAGAGAAAGCAAGT
CTGTTGTGGCGTGCGTGTCCCCAGATAGTCACAGCTTTAACACTCTTAAACCGAGAAGCTTCTCAGGAGCAGCCTGTGTCCCTCACAGTGGTCGGGCCTG
TCTTAGATGTCCTGGCTGCACTGCTGCGGCAGGGGGAGGAGGCCATCGGCAACCCCCACCACGTCAGCCTGGCCTTCAGCATCCTTCTCACTGTCCCTTT
GGACCATCTGAAGCCGCTGGAGTATGGAAGCGTCTTCCCGAGGCTGCACAACGTGCTCTTCTCAATCCTGCAGTGTCACCCTAAGGTAATGCTGAAAGCC
ATCCCTTCTTTCTTGAACTCTTTCAATAGATTGGTGTTTTCAGTTATGCGGGAAGGGCGGCAGAAGGACAAAGGAAGCATAGATGACCTGCCTACGGTCC
TAAAGTGTGCACGCCTGGTTGAAAGAATGTACAGCCACATCGCCGCACGAGCTGAGGAGTTTGCTGTGTTTTCCCCATTTATGGTGGCCCAGTACGTGTT
GGAGGTACAGAAGGTGACCTTATATCCAGCTGTGAAAAGTCTGCTGCAGGAGGGCATTTACCTCATCCTGGACCTCTGCATCGAGCCTGACGTCCAGTTC
CTGCGGGCCTCGCTGCAGCCGGGAATGAGAGACATCTTTAAGGAGCTCTATAATGACTATCTCAAGTACCACAAGGCCAAACATGAAGGAGAGAAAAGAT
ATACGGCCTAAGGCTATGGGACAGAAGTGCCGCCAGTGACACTGTCCAGAGGCTTTGGCTGCATGGTCTGAAAGAGCTGGAGAATGAAAGACTTAAGATG
TTCTAATTCGTAGTATTGGTATACATAGAAAATCCTTTGGGGTTTATGTAGTATATTTTGATGTATTTTACATCGTGTTTTTCTTACTATTTTTTAATAC
ATAGTTTTATGCAGTAAGTATTGCAATAGAATCCTGAAAATTGACCCTGGGATGAGATTAATTCAATAGAAAAATTGCTGACTCTTGGGACCTTTCTGTG
TTTGGTTCTCGTCTTGGCTCAGTGGTTTGGTGTTCCCTCGTCTGCACTGGAAACTACATAAAACTTGGCTTTTTACTTTGGGTACATGGGCGTATAATTC
AGCCCTGTTTAAATATACTTGCCTTTCAAATTCTTCAAGTAACATGGGAAGTATTCTTGAAATGTCACATTTTCTGCCTTCCCTCTAAGTATGCTTTCTG
AAGAAGTCAGGGAAAGTTAGAGTCTGTGGCCTGAGGTGTCTGCTCTGGGTGGCGATAGTGGGCACCTCAGGCAGGTCGGTGACGTTTAGCACAGGTGCCA
GGGCTCCTGCCTGCTCCTCCTGTGTTAGCTCTGTGAAGTTCATTTAGGAATTTTTTTTTCCTATGCAGTTTAAGAAATAATCCTAATTGTTTTTTCTTAT
TACCTAAGCAATATATTTTTATTATAGCAACCTCAGAAAAGAAAAATAAAAGGATAATTTAAAAAACTCATTCATAGTCTCAGTTACCCAGATAACCTCG
GTTGTCACCTTGGAGTATCTTGTTGTAGTCCCTTTACTATGTGTATGTATATAGATGTGCATATAAATATATATAGTAGCTAAATTGGATCATAAATGCA
TTTTTTTAAAGTT

Loop counts:

3 nts: 1
4 nts: 1

Tetra-loop variants:

UUUG    1

Single bulge variants:

G x 0 bulge: 0
A x 0 bulge: 0
U x 0 bulge: 0
C x 0 bulge: 0

1 x 1 internal loop variants:

G x G bulge: 0
G x A bulge: 0
G x U bulge: 0
G x C bulge: 0
A x G bulge: 0
A x A bulge: 0
A x U bulge: 0
A x C bulge: 0
U x G bulge: 0
U x A bulge: 0
U x U bulge: 0
U x C bulge: 0
C x G bulge: 0
C x A bulge: 0
C x U bulge: 0
C x C bulge: 0