Annotated gene sequence
Experiment = in vivo icSHAPE / NAI-N3
RefSeq = hg38
Cell = HEK293T
Original Data Reference = Cell. 2016;165(5):1267-1279.
stable secondary structure
loop
bulge/internal loop
no SHAPE data
coding sequence
GAGAGGTTACTTCCGGGGCGGCACCGAGAAGCTGAAACGGAAGTGGCGTACGGCATGCGCCGGTGGCGTGATGGAGCGGCAGCAGCAGCAGCAACAGCAA
CTGCGAAACCTGCGTGACTTCCTGTTGGTCTACAATCGGATGACAGAACTCTGCTTCCAGCGCTGTGTGCCCAGCTTGCACCACCGAGCTCTGGACGCTG
AGGAGGAGGCCTGTCTGCACAGCTGTGCTGGGAAGCTGATCCATTCCAACCACCGCCTCATGGCCGCTTACGTGCAGCTCATGCCTGCCCTGGTACAGCG
CCGCATCGCAGACTACGAGGCTGCCTCGGCTGTGCCAGGCGTTGCTGCTGAACAGCCTGGGGTCTCTCCATCAGGCAGCTAGCCATACCCAACCCCAGGA
AGGAAGGCCTTGGATGGACCCTCAGATTGAAGGACCCGGTGGACCTTGGGGTTGGTGAATCCTAAACAGAGAGAATTCGAGGTTGCCTGAAAGCTGGGTG
TCCTTGCTCCTTTTCCTGGAGCCAATATACCCAGTTTTTACTCAGTTTGATTTATATTCTGGGCAAGGAAGCTTTGCCTACTTTATTGGCACAATCCGTT
GTTCTGTCGTTTAGTGCATATCTGCTGGCTTCAGCCCTGGCAGCTGAGAAATTGTTTTCTATATGTAGAAGGAAAACCTGAGCATTTGCAGGCATCTGGT
TAAAGCAGGGTCTGTGTGTACAATTTTAAAACGGGTAATATGTCATGCTCTTAGTTCATCTTCACAACAAAACTATGAGTAAGCGGTATTAGCCTCACTT
AACAGATGAGGAAGCAAGATTCCAGAAAGTACCAGAAGGTCATTTTATACAACAGGAGATTGGTTCCTGCCCAGATGACAGAAAATGGGAGCTCTGTCTA
GTTGTCCTTAAGTCTGACTGACTTCAGTGGCTCATAACCGTGAGCCAAGTATTTGTTGGTTCATAACTGTTGTTTTGTGAACTATGTCTTACATGTCTAG
AGTTCTGCTGGATCTAGGGAAAGGAGGAGCTATCGAAGTACAACGGATCAAAAAACCACAGGGCTTTTGGGCACTGCCTCCTTGGGAAGTTAGTGGCCAC
AGAAGAGAGATGAAACCTGTAAGAAGTCTGGAGTCTTTTGGAACTTCAGCCATTTCCCCAGGTTGTTACTTTCTTAGTATGTACAGTCTTCTCAGGATGA
GCAGTAAAACCTTTGAACAAAGGTCTGTGTGGTTGTCTTCACGGGCAATCAGGAAGGGAGAGAGCTGGGGACCATATTCTGCAATGCAGCCAAATCCGAG
GAAGAGAAACTGAAGGGAGAAGTAGATGGCAATGGTTATGATAAAAAGGGATAAAACTAAATCTTCGGGACTTCTTTAATGCTACGTTAATGTTTCACTG
CTCGTCTAGAAACTCCTAAATCCAGCTTTCTATCATCTGCCCCACATTGGTCCCATTGAGTACATTCTGTGATTTCTAATTCCAGCCTCTCCATTCTTTT
CTCATTATTGCCTCCCCCGCCCCCCAACTTTGTGTAATTTACTTCTGTATTCAGCAGCCTGGATAGCATATCATTCCATCACCCCATTTTCTTGCCACCA
TTGGCCATCTTTTTGTATCATTCCACTTATTCTGTCTTTTCCATTCCTTCATTCAAACTGCTAGAGAAAAACAGTTGTGTAATGAATGCCACTAAATATT
CAAGGCCTCCAACCTCAGCCAAGTCCTCACACCAACACGCAGTCACACCAACACACACCTTTATGGGTTCCTGGTCCATTTCCTTCTCTAATTACCATGG
CAGTTATTTTACACCTCTACTGCTGTCCTTAATCCCATACCCCACCCTCATCAGGTGACCCTGTTTCCTTTTTTAGAGAAATTGAAGCTCTTAGACATTG
GTTTCCACAGTAATAATTTTAAAACTTCTTACAACTACCTACAAAGCAGATGTTCTATCCTATCTACAGAGCAGAAAATTGAAATTCTCAAGTAGCAGAC
CCGGTATTAAAGTGCAGATCTGACTTTAAAGTCCATGTTCATTTTACACAGCAGGCTGCCTCTTAAGATAGTATTTATTGAGCACACACTTTGTGTAGGT
TCTGATTTTGGTAGATGTCATGCTTTATATTAATCTTTACAACAACTATAAGTAAGAGGTATTAACCTCACTTAACAGATGAGGAAGCAAGAATCCAGAA
TGTGCCAGAAGGCACATTCTGCAGATTTCGTGCAAACATTTATACACAGCTTCTTTTTTTTTTTTTTGAGACAGAGTCTCGCTCTGTCACCCAGGCTGGA
GTGCAGTGGAGCGATCTAGGCTCACTGCAACCTCCGCCACCCGGGTTCAAGCAGTTCTCCTGCCTCAGCCTCTCGAGTAGCTGGGATTACAGGCATGCGC
CACCACGCCCAGCTAATTTTGTTTTTGTATTTTAAGTAGAGACGGGGTTTCACTGTATTGGTCAGGCTGGTCTTGAACTCCTGACCTTGTGATCCGCCCG
CCTCGGCCTCCAAAAGTGCTGGGATTACAGGTGTGAGCCACCACGGCCGGCCTATACAAAGTTTCTTATTGAGAAAAGTGGTTCCAATCATGTTTTTTGC
CCCCTTTAGCTGCTATCTCTTGAACAGAAAAGTTTGTTAGGAAGGTAAAAGTTGCTGACTAGGACCTTACCCACAGGGTGGCACTCTGTCCTTGGGAAAT
ATAAATGCAAGTAAAACAGGTTTGAACTTCTTAACTTCCAGAAGATAGGAGGATGGGACCTGTGATACTGTGCTGCTGGTGGGAGGACCCTTCCACATCA
ACATTTGTGTGTATCCTTGCAATAAACTTCCATTGTGAAT