Annotated gene sequence
Experiment = in vitro icSHAPE / NAI-N3
RefSeq = hg38
Cell = HEK293T
Original Data Reference = Cell. 2016;165(5):1267-1279.
stable secondary structure
loop
bulge/internal loop
no SHAPE data
coding sequence
GTTTTGTGTTCTCATTTATTATCATTTTTTTCTGTACAAATCTATTATTTCTAGATTTTTGTATAACATGATAGACATAAAATTGGTTTATCTCCTCCAA
GGCAGTTTGTCTTTTTCTATTCCTCCCCCTTCAACCTGCGTCACAAAAGACCAAGAACAGATGTCGGAAAAGTTTTTTTTTCTTCAGTATTGTTTAAAAG
TTTCAATACAAAATAAGTTATAAATAAAAGGCTTGTATGTACAAGGCTCCTCAGAGGGAATGAGTTGTCTTCAACCCCATAGAATGATGTGAGTCCAAGC
TGGCTCTAGAGGATCACAGCCCAAGTATCACAGGCCTAGGTTTAAACAGGAAAATAATTAGCTTAAATTGTATTCTAGTCATGAAAGATATCTGATAAAA
GTTGTAATCAATGAGAATTCTACACATTAGATGAGGTCTCCTGAGTCCAGTTTCAATTAGTTCAGTAGTGTAGTTTGTCATGATGACCGCCCCTCTTTGG
CATTGCTGGACCTCTGTCCTGCAGCCTTCAAACAACTGCCCTGGGAACCATCAGCATCAATAGTCTTCAAGCTAAGATCAAATCCTGTAGATGAACTAAT
CAAACATCCTCACCATCAGGAAACCACTGACCAGAAAGATTGTATTCAAACTCTTGATAGCCTGGAGCTTTTAGAGCCCAGCAGGAAGATGAGACTCCAA
ATCTACACAAGATTGAAGCAGGTATGTATCATAGGGGAGGTGCAAACCATGCATGATCAGTACGGGCAGAAAACATGTAAAGACATGATCAGTAAGCACC
TGAGTGTAAAACTGCCTCCCGACTCCTGGGTGGCTCAGCCTCTCCACTATGCTAAGGAATCCAGTCTGTCCTTAACCCATTTATGCCAGAGGTTGCAAAT
TTTTTTGTGTGAAAAATCAGACCTTGGCGATGACCTTGAGCAGTAGGGGATCAATAACTCCCACAGGCTTAGCGTTCCAATAATTAAACAGTAGGCATAA
GTGGGTTACTCTTGTTTCTTACCACTTCCACAGGTAATATGTTTGGCTTTCTCTAAAAGACACTGTAACTCTGCTAATAGGCGGTTTGGCATATTCCATC
CCAGGACCACCACTTGAGCACCGCCACATCCGAAACATTCCTCGTCTTGTGATAGAGTGCAATCTTCTGTAACCCACCCCTATCTTTCAACACATCCTCA
GCCATCTGTCCTGAGCGTCCCTACGTCCTGACCTCACTGGATTCTAACACAATGGTCCTTGATTCCCCCTTAAGTGAAAACCAAAGGTCTAGTGGAACTA
GAGCATTCCAAATGTCTACCTTTCCAAATGTTGAACTCAAGACCTACAGAATACAATTTTGTCTTTCCCCCTCCTCTTTTTTTTTTTTTTTTAAGGCACA
ATCTCGCTGTCACCCAGCCTGGAGCGCAATGGCGCCCTCTCAGCTCACTGCAACCTCTGCCTCCTGAGCTCAAGCCATCCTCCCACTTCAGCCTTCCGAG
TAGCTGGGAGTACAGGTGCGAGCCACCACACCCAGCTAATTTCTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGCCCAGGCATGTGGCGCACGTCT
ATAATCCCAGCTACTCGGGAGGCTGAGGCAGAAGAATCACTTGAACCCAGGAGGCGGAGGTTGCAGTGATCCGAGATTGCGCCACTGCACTCCAGCCTGA
GTGACAGAGCGAGACTCTGTGTCAAAAAAAAAAAAAAGAGAGAACTGATTTCTGATGCCAGGACGACCCTGCTGATTCCACATACTTGGAATCTGTGTTG
TTCAGAATCTGTGTGCTCATTCATTCAGCAAACATACAACAGTACCTAGTATCTGCTAGTCACAGGGGCACAAAGATGAAAAAGACTGTCATTGTTGAGC
TCACAGTCTAGACATTAGGGAAGGGGTCAAAAAACTAC