Annotated gene sequence
Experiment = in vitro icSHAPE / NAI-N3
RefSeq = hg38
Cell = HEK293T
Original Data Reference = Cell. 2016;165(5):1267-1279.
stable secondary structure
loop
bulge/internal loop
no SHAPE data
coding sequence
GCCCCGCCGCCACCGCCGCGCCGAGTCCTTTTGTCCAAGATGGCGGCGCCGGGGGCGCTGCCTCCTCGGCCGCCGCCTCCGCCGCCGCCGCTGTGAGAAA
CCTACGGGCCGCCCGCCCGCCGCGCCAGCGCCATGAAGCGGCAGAGCGAGCGAGACTCTAGCCCGAGCGGGCGCGGCTCGTCATCGTCCGCCAAGCGTCC
GCGGGAGCGCGAACGGGAGGCGGAGGCGGGCGGGCGGCGGGCGGCGCACAAGGCCTCTGGCGGCGCCAAGCACCCGGTTCCAGCGCGGGCCCGCGACAAA
CCCCGCGGCAGCGGAAGCGGCGGGGGCGGGCATCGCGACGGCCGCGGCACCGGGGACGCGAATCACCGCGCGAGTAGCGGGCGCTCCTCGGGCTCCGGCG
CTGGCGGCGGGGGACGCGGCGGCAAGGCCTCGGGGGACCCGGGCGCCTCCGGCATGTCGCCCCGCGCGTCTCCTCTGCCGCCGCCTCCGCCACCGCCTGG
GGCCGAGCCCGCGTGTCCCGGCTCATCCGCGGCCGCGCCTGAGTACAAGACGTTGCTCATCAGCAGCTTGAGCCCCGCGCTGCCCGCCGAGCACCTCGAG
GACCGGCTCTTCCACCAGTTCAAGCGCTTCGGCGAGATCAGCCTCCGCCTGTCGCACACGCCTGAGCTGGGCCGTGTGGCCTACGTGAATTTCCGGCACC
CACAGGACGCACGCGAGGCCCGCCAGCACGCCCTGGCCCGGCAGCTGCTGCTCTACGACCGCCCGCTCAAGGTAGAGCCCGTGTACCTGCGTGGCGGCGG
CGGGAGCAGTCGGCGAAGTAGCAGCAGCAGCGCCGCCGCTTCCACGCCTCCCCCAGGGCCGCCCGCGCCCGCCGACCCGCTCGGCTACCTCCCGCTACAC
GGAGGCTACCAGTACAAGCAGCGCTCGCTGTCCCCCGTCGCTGCCCCGCCCCTGCGGGAGCCCCGTGCCCGTCACGCCGCCGCAGCCTTCGCCCTGGATG
CCGCTGCTGCCGCCGCCGTGGGACTGTCCCGGGAGCGGGCCCTGGACTACTACGGGCTGTACGACGACCGTGGGCGCCCCTATGGCTACCCAGCTGTGTG
TGAGGAGGACCTGATGCCCGAGGATGACCAGCGGGCCACGCGCAACCTCTTCATTGGTAACCTGGACCACAGCGTATCTGAGGTGGAGCTGCGAAGGGCC
TTCGAGAAATATGGCATCATCGAGGAGGTGGTCATCAAGAGGCCTGCCCGTGGCCAGGGCGGTGCCTATGCCTTCCTCAAGTTCCAGAACCTGGACATGG
CCCATAGGGCTAAGGTGGCCATGTCGGGCCGAGTGATTGGTCGCAACCCCATTAAGATAGGCTATGGCAAGGCCAACCCCACCACTCGTCTCTGGGTGGG
TGGCCTGGGACCTAACACGTCACTGGCGGCTCTGGCCCGAGAGTTTGACCGCTTTGGGAGCATTCGGACCATTGATCACGTCAAAGGAGATAGCTTTGCC
TATATTCAGTACGAGAGCTTGGACGCAGCCCAGGCCGCCTGTGCTAAAATGAGGGGTTTTCCCTTGGGTGGACCAGACCGCAGGCTCCGCGTGGATTTTG
CCAAAGCAGAGGAGACTCGGTACCCCCAGCAGTACCAGCCCTCGCCACTCCCTGTGCATTATGAGCTGCTCACAGATGGATACACCCGGCACCGCAACCT
GGACGCCGACCTGGTGCGGGACAGGACGCCCCCACACCTTCTGTACTCAGACCGAGACCGGACTTTTTTGGAAGGGGACTGGACCAGCCCCAGTAAAAGC
TCTGACCGCCGAAACAGCCTTGAGGGCTACAGTCGCTCAGTGCGCAGCCGGAGTGGTGAGCGTTGGGGGGCAGATGGAGACCGTGGTTTGCCCAAGCCCT
GGGAAGAGAGGCGGAAACGGAGAAGCCTTTCCAGTGACCGTGGGAGGACAACCCATTCACCATATGAGGAACGGAGTAGGACCAAGGGCAGTGGGCAGCA
GTCAGAGCGGGGCTCCGACCGCACCCCTGAGCGCAGCCGCAAGGAGAACCACTCCAGTGAAGGGACCAAGGAGTCCAGCAGCAACTCCCTCAGCAACAGC
AGACATGGGGCTGAGGAACGGGGCCACCACCACCACCACCACGAGGCTGCAGACTCTTCCCACGGGAAGAAGGCAAGAGACAGCGAGCGCAATCACCGGA
CCACAGAGGCCGAGCCCAAGCCTCTGGAAGAGCCAAAACACGAGACCAAAAAGCTGAAGAATCTTTCAGAGTACGCTCAGACACTACAGCTGGGTTGGAA
TGGGCTTCTGGTGTTGAAAAACAGCTGCTTCCCCACGTCTATGCATATCCTAGAGGGGGACCAGGGGGTGATCAGCAGTCTCCTCAAAGACCACACTTCT
GGGAGCAAGCTGACCCAGCTGAAGATCGCCCAGCGCCTTCGACTGGACCAGCCCAAGCTTGACGAGGTCACACGACGCATCAAGCAGGGGAGCCCCAACG
GCTATGCGGTCCTCTTAGCCACCCAGGCAACCCCCAGTGGGCTTGGCACTGAGGGGATGCCCACAGTAGAGCCCGGTCTGCAGAGGCGGCTTCTCAGGAA
CCTGGTCTCCTACTTGAAACAGAAGCAGGCCGCAGGGGTGATCAGCTTGCCAGTGGGGGGGTCCAAGGGCAGAGACGGCACAGGCATGCTCTACGCCTTC
CCACCCTGCGACTTTTCCCAGCAGTACCTCCAGTCAGCACTAAGGACATTGGGCAAGCTAGAAGAAGAACACATGGTGATAGTCATCGTCAGAGACACTG
CCTAGCCCAAGCCTGTCTTTCCCAGCGTCATGTTTGTGTCACAAAAGCAGTTATTTTAAAATCTGATCCCCTCTCTACCCTACCACTTTGGTTTGAATTA
TCTCCTGGGTTATTTTGGTTCATTTGGGTGGGGATCAAAGTCCTGTCCACCACCAAAACTAAGTTCTTAGATTTTGGGGGATTTTTTTTTTTAAACGATG
AGAAGGGAATCCGGTTATGTTGATTTCTAGTGTACAAGATACTGTCTGCTGTGGTTCTGTATTTTTTTATTTTTTGACCAACTGTATGGAAAGTTGTCAG
TAAAACCTTTGACAGAGGATGGATTTTTAAACCTGTTCAGAGTCCTGGTTTAATCAATCAAGCTAAAAGAATCGAAGACATCCCTAGTGCATGTACACGA
ATGCCCTACGTCATCCTTCCAGCACCACTGCTGCATGGGTCACTCTCGGCCTCTCAATTCTTCAGGCTCAGTCTGGACTCTACTTACACTCATTTTTATC
TTGGCTGACAGCAGGCAAGCTTCAGTTTGGGCTGTGGACGCTGCCACACAAGCCTGAGTAGAGCCCATGCAAAGGAAGGGATGGGGTGAGCGCAAGGCCT
GTGGTCAGCAGCTACTGATGGTTTTTTCTGCCTTAAACCGTGTGTGTGTCCATCATCATCAGTTTGAGCTGTGGCTGTTTGTTTGGGACAGAGTGCCCAC
TCAGCATGTTTGGCAGCAGGTAGCCTTCAGCAGCTGTGTAGTCTTGTACAAGGAGAAGCTGTGCACTGTTGATGCCAGGGGGTCTCGGGGCCCCTGATCT
GTCCAGGCTCCTGGTTCGGCCTACTTTCTAGCCTCACTCAGCCCAGGGATAGCCAGTGTTGGGAGACAGAGTTGCCTCAGGTTCCCAGGGGCCCGGGAGT
CCAAATACTGGAATGGAGGGTTGGAGGCAGCCTTCCTTGGATTTACTCATGAACTTTGCCTAGTTGTTTGTGATTTTTGGCTTTCTCTGGTCGTTCAGGG
GTGATGGGTAATAGAGCAGGCCCGTGTCCAGTCATACCTAGAGATTTGTGGGGGGATACTGAACCTCTAGACTGAAGTACTTACCGGGGAGCACAGTGGA
CTAGGGGATGCCCTTGATAATGACGGTTTCCTAGGTGCAAGATCAGAGCATGTGCCTACACCTTGTGCCCTGATGCCGAGGTGGAGACCATTGGGAAATA
ATTAATAGATATTTTTCTGGGGGGAAATCACAAGTCACTGAGGTGTTTGTTTGTTTGTTAGGCAGTGCTAGAGCTTGAAGCCACTCAAGCCAGTTGGGGA
GGAAAGGGATGCGGAGGTACCCTCTAGCTGGGAAGAAGGGTGAGATTCCGTCTTCTTCCCTGTCTCAAGTAAGTAAGGAAGGTACTGCGGACAGTGTGGG
CCAGGGAGGAAAACCAGAGCACACAGTTTTGTCACCATGGAACACCCCAAATGCCATTCTTCAGCGTGTCTGGTACCTTGGATGTTCAAACAGGGAACAC
TGTCAGGGCTGAGGAGAACAGAAGCTCTGGTAAGCGAATGAGCCCCTAGATGATAACCAGGAACTCCAGGTTCTGCTGGCCGTGGCATCCTCTCTCCAGG
TCTGCTCCCTTACCGGAGCTAGGATAAGGTAGCATGAGTGACACCTGAGATTAGAGGCTGGGGCTCACTGCAGGCTGTGGAGAGGTCATGCTGGTCCACA
GGAACACTTGGCAGTGCTCTCGTAGACCCCTCGGTGATGTGGAATGGACAGGTGCCTCGCAAGAGAGCAAGCACGTTCATAACAAAACAGCAACACAAAG
ACATGTTAAGCATGTTTATTTATTTGCCTGTTTTTGTTTTTTTACTTGAGCTGTGGTCACAGCTGCCAGGTACCTAAGCAAGTCAGTTGGGTACAGCAGG
ACACGCCACCATTCCAGGGTAGCTGGTACCGCCAGAAACAGGAGTGGGTCTTGTCCTGTTGCAGGCACACTGCAGTGGTTTTCCTGCAGCTCTCCAACAA
ACGCCTGAGTCACAGGCCAGAGCTGCCTTGGTATGTTGTTAAGTCCAAAACTTCTTCTCTGGGCTACCTATCTTCCTTCATGAAGCAGGTGCTCAGGACC
CGGAAGAATCATCTACCTCCCAGCTTTGTGAGACAGAACCAAGTAAAAGGAAACATGCTAGAAAACGTGCCTAGAGAAGACACTTCAACCTTTGCCTTAT
CCAACCCCTCTTCAGAGAAAGGTGTCCCATGGCCCCAAAAAGAACTGCCAAGTTTTGGTGAGGAGTAACACCCTGGCATGACATTCCTTCTCTTTCCTGG
CCCTCAACCACTTCCTTCCTTTGGCTCTTAAGACCTAGCAGGTTCTGTGAACTCTCAGGCCTTGGCCAGCACTAGTTAGGGGAGGTCAGGTGGTCAATGT
CCTGGTGATTTTATGAGACTGCCCCACTGAGAAAACTTACTTACTTCAGGCATCCAGTGCCCCCACCCAGGGTTCAGGCCCTGTCTAAGGTGTTGCTTAA
AGACAAAAAGGCAACATGTGCCTCACTGGTGGTGTGCCACTGTTCTCATGCTGCCTCCTAAGTGACTCCGATTTTCAGCCCTGGTAGAATAAGGAAGACA
GCTGATGCCTCCTTAGCCCCTTAGCACATGTTCCTAAGGTGTGTTGTCAAGCCAACCTGAATTCTGCCTCCCTGTTATAGTCCCTGTCTCCCCCACAGAG
ACCTGTGGGTGCTCCCAGCAGAGTTGAGACTGGCTCCGTTGAGTTAATGACTAGAATATAGTGCTTTCACTACTTGATTGTTAACCTGTTTTCTTCTGAT
GCCATCAGTACCAGCAGTCAGACTATTCCACTGGTTAAGTGTTTACTACCATTAAAGCGAGGCATGAAGCAAAGAGCTGAGTGAGTCCTCTGCTCTCCAG
AGGACCAAGAAATACCTGTGTGACACAGACCCACTTCAGTGTGTACAGCAAATTCTATAGTGCTTCTGAGCCCAGCAGGGCTTTACCTGCCCCTGGAGAG
TTTTAGCCGTCTTGTGTTTCTTGTTTACTTCACAACCAAATTTGTCCCCTCTTCTCTCTGTTAAGGGAGAGAAGTCACTTTAGCTGGATAATACCTATGT
AACAAACTGAGCAGCTGTTATTTGGGCAAAATCAAAGGAAGAAAGAGACTATGGTCTTCTATTTATTGTGGGAAGGAAAACAGGGTGGGGCGGGTGAGTG
AAAAGGTGGAAATCCCTGGTACCTTGCCTGGTGGTTACACAGTTTAACCATAGGCCAATTTTAGGGGCCTCTGAAGTATCTTTCTACAAACGCAGACAAG
CTCCACTACCCCTAACCTGCCAGGATGCTCAAGTCCACTGTCACAATCCCTTTCAGAAAACATTAGTGGCCGCTGCCCCAGCTACAGAGACGGCCGAAAT
GCTTTCACTCCTTAGCTTTGCCAACTCCATCCTCCAAAACTTCCCAGAATACCTCCCTTTCCAGTTCTACCAAATCTGTACTTGGGAGCAGCCTGCTGGA
TCCAGAACATGACAACAGAGAGCTGCGTCCACAGGGAACAAAGCCCTGACCTCTCTCTCCACATTACCCTTACAAAAACAGGCCCTCCCCATGAGAGAGC
TACACGGCAGGGGCAGACACTGTGAGTATAAGCTACTTTCCTCCCTGGAGTGCTCTATGTGGGCAGAACATGCTCTCCTTGCCTCTCCTGGAAGGTGTCT
TCTCTATGGCCTGGCTAGAGCTGCAAAAAAGGGACACACCCCACTTCGGTAAAAGAAAATAGGGAAAGGCCATAAACAAAGACAGACTTGTAGTTTATTT
TGTATTTTTTTTAAATAAATACACTTTACATTAAAGAAAAA