Annotated gene sequence
Experiment = in vitro icSHAPE / NAI-N3
RefSeq = hg38
Cell = HEK293T
Original Data Reference = Cell. 2016;165(5):1267-1279.
stable secondary structure
loop
bulge/internal loop
no SHAPE data
coding sequence
GCCCCAGGAGAGGCAGAGAGTGAGGGAAAGGGCCTGGCCGGCATGCACAGATAGGATCACGGTCCTGGGAGAATTCCTGCTCTTATAGTCTAACCTACCA
TGGCTTCTCTTTTCTCAAGGCTCCCTCATGCTGCCCTTTGGCCCTAGTGGCTGGTTTCCAGGGCTGAGGGGACTGAGTGAGCTGCCTGAGAAAAGAGGGT
AGGGAACAGAAAAGCCAGCCAGGAGCTGTGGGAGGAAACGCCCTCAGTAAAGATGACCGCGGTCACTGTTATCTAAACGCAAGTGAAGCCGAGTCACAGG
ACCCGGATGTTGTCAGTTCGACGGTAAACGACCCTGCCAGCTTCCAAGAGGGCGGCTTCACTGTGCGAATAGGTGAGAAGCCAAGAAGGAGGCGCGCTGG
AGTTACTTCCGCCCGGTTCTCCTTCCCGCAGTCTGCAGCCGGAGTAAGATGGCGGCGCTGAGGGCTTTGTGCGGCTTCCGGGGCGTCGCGGCCCAGGTGC
TGCGGCCTGGGGCTGGAGTCCGATTGCCGATTCAGCCCAGCAGAGGTGTTCGGCAGTGGCAGCCAGATGTGGAATGGGCACAGCAGTTTGGGGGAGCTGT
TATGTACCCAAGCAAAGAAACAGCCCACTGGAAGCCTCCACCTTGGAATGATGTGGACCCTCCAAAGGACACAATTGTGAAGAACATTACCCTGAACTTT
GGGCCCCAACACCCAGCAGCGCATGGTGTCCTGCGACTAGTGATGGAATTGAGTGGGGAGATGGTGCGGAAGTGTGATCCTCACATCGGGCTCCTGCACC
GAGGCACTGAGAAGCTCATTGAATACAAGACCTATCTTCAGGCCCTTCCATACTTTGACCGGCTAGACTATGTGTCCATGATGTGTAACGAACAGGCCTA
TTCTCTAGCTGTGGAGAAGTTGCTAAACATCCGGCCTCCTCCTCGGGCACAGTGGATCCGAGTGCTGTTTGGAGAAATCACACGTTTGTTGAACCACATC
ATGGCTGTGACCACACATGCCCTGGACCTTGGGGCCATGACCCCTTTCTTCTGGCTGTTTGAAGAAAGGGAGAAGATGTTTGAGTTCTACGAGCGAGTGT
CTGGAGCCCGAATGCATGCTGCTTATATCCGGCCAGGAGGAGTGCACCAGGACCTACCCCTTGGGCTTATGGATGACATTTATCAGTTTTCTAAGAACTT
CTCTCTTCGGCTTGATGAGTTGGAGGAGTTGCTGACCAACAATAGGATCTGGCGAAATCGGACAATTGACATTGGGGTTGTAACAGCAGAAGAAGCACTT
AACTATGGTTTTAGTGGAGTGATGCTTCGGGGCTCAGGCATCCAGTGGGACCTGCGGAAGACCCAGCCCTATGATGTTTACGACCAGGTTGAGTTTGATG
TTCCTGTTGGTTCTCGAGGGGACTGCTATGATAGGTACCTGTGCCGGGTGGAGGAGATGCGCCAGTCCCTGAGAATTATCGCACAGTGTCTAAACAAGAT
GCCTCCTGGGGAGATCAAGGTTGATGATGCCAAAGTGTCTCCACCTAAGCGAGCAGAGATGAAGACTTCCATGGAGTCACTGATTCATCACTTTAAGTTG
TATACTGAGGGCTACCAAGTTCCTCCAGGAGCCACATATACTGCCATTGAGGCTCCCAAGGGAGAGTTTGGGGTGTACCTGGTGTCTGATGGCAGCAGCC
GCCCTTATCGATGCAAGATCAAGGCTCCTGGTTTTGCCCATCTGGCTGGTTTGGACAAGATGTCTAAGGGACACATGTTGGCAGATGTCGTTGCCATCAT
AGGTACCCAAGATATTGTATTTGGAGAAGTAGATCGGTGAGCAGGGGAGCAGCGTTTGATCCCCCCTGCCTATCAGCTTCTTCTGTGGAGCCTGTTCCTC
ACTGGAAATTGGCCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTTCATGTACACTTGGCTGTCAGGCTTTCTGTGCATGTACTAAAAAAGGAG
AAATTATAATAAATTAGCCGTCTTGCGGCCCCTAGGCCTAAA