Annotated gene sequence
Experiment = in vitro icSHAPE / NAI-N3
RefSeq = hg38
Cell = HEK293T
Original Data Reference = Cell. 2016;165(5):1267-1279.
stable secondary structure
loop
bulge/internal loop
no SHAPE data
coding sequence
AAGGGGGAGCTGCGGGCCAGGCGGCGGCCCCCTAGCGTCGCGCAGGGTCGGGGACTGCGCGGCGGTGCCAGGCCGGGCGTGGGCGAGAGCACGAACGGGC
TGCCTGCGGGCTGAGAGCGTCGAGCTGTCACCATGGGTGATCACGCTTGGAGCTTCCTAAAGGACTTCCTGGCCGGGGGCGTCGCCGCTGCCGTCTCCAA
GACCGCGGTCGCCCCCATCGAGAGGGTCAAACTGCTGCTGCAGGTCCAGCATGCCAGCAAACAGATCAGTGCTGAGAAGCAGTACAAAGGGATCATTGAT
TGTGTGGTGAGAATCCCTAAGGAGCAGGGCTTCCTCTCCTTCTGGAGGGGTAACCTGGCCAACGTGATCCGTTACTTCCCCACCCAAGCTCTCAACTTCG
CCTTCAAGGACAAGTACAAGCAGCTCTTCTTAGGGGGTGTGGATCGGCATAAGCAGTTCTGGCGCTACTTTGCTGGTAACCTGGCGTCCGGTGGGGCCGC
TGGGGCCACCTCCCTTTGCTTTGTCTACCCGCTGGACTTTGCTAGGACCAGGTTGGCTGCTGATGTGGGCAAGGGCGCCGCCCAGCGTGAGTTCCATGGT
CTGGGCGACTGTATCATCAAGATCTTCAAGTCTGATGGCCTGAGGGGGCTCTACCAGGGTTTCAACGTCTCTGTCCAAGGCATCATTATCTATAGAGCTG
CCTACTTCGGAGTCTATGATACTGCCAAGGGGATGCTGCCTGACCCCAAGAACGTGCACATTTTTGTGAGCTGGATGATTGCCCAGAGTGTGACGGCAGT
CGCAGGGCTGGTGTCCTACCCCTTTGACACTGTTCGTCGTAGAATGATGATGCAGTCCGGCCGGAAAGGGGCCGATATTATGTACACGGGGACAGTTGAC
TGCTGGAGGAAGATTGCAAAAGACGAAGGAGCCAAGGCCTTCTTCAAAGGTGCCTGGTCCAATGTGCTGAGAGGCATGGGCGGTGCTTTTGTATTGGTGT
TGTATGATGAGATCAAAAAATATGTCTAATGTAATTAAAACACAAGTTCACAGATTTACAGTGAACTTGATCTACAAGTTCACAGATCCATTGTGTGGTT
TAATAGACTATTCCTAGGGGAAGTAAAAAGATCTGGGATAAAACCAGACTGAAAGGAATACCTCAGAAGAGATGCTTCATTGAGTGTTCATTAAACCACA
CATGTATTTTGTATTTATTTTACATTTAAATTCCCACAGCAAATAGAAAATAATTTATCATACTTGTACAATTAACTGAAGAATTGATAATAACTGAATG
TGAAACATCAATAAAGACCACTTAATGCACGCTTTCTATTTTATTGAACTCTTATTAACTGTAAAATGCATTTTTAAAAGATCAAAAATGCATATTTTCT
AGCATGATTCATGTATCAGTCAGCAGCCAAGCTTCTAAATGCCAGATATTATATTGAGAATGTATTATATGAGAACGTACAATGCTTAAAGTTCCGGTTT
TCAAACTTAGGCAGGTCATATTCTATCTATCTTATCCAGCATTACTGTAGGCTAGAAAGTGATAATGGCTTTCATAATCCTGCCTTGTCTTAGGCACTTT
CCTGCAGTCTTTAGAAATTCTAAGATTCTGCTAAAAGTTTTAAATCACAATCTGGAGAATTTTCTATGATTAGGAAGTGCTCTGTTTTCATCCCTTTAGA
TAACTGTGACACCTAGAATTTTATGTTAAGTAGAGAGTATTCATTGAAAATCAAGGCCAGGTGCAGTGGCTCACACCTGTCACCCCAGCACTTTGGGAGG
CAGAGGTGGGCGTATCACTTCAGGCCAGGAGTTTGAGACCAGCCTGGCCAACCGAGCGAAACCCCATCTCTAATAAAAATACAAAAAATTAGCTGGGTGT
GGTGGCGCACACCTGTAATCCCAACTACTCAGGAGGCTGAGGCATCAGAATCACTTGAACCCGAGAGGCAGAGGTTGCAGTGAGCTGAGATGGCATGCCA
CCACATCCATCCTAAGCGACAGGGCAAGACTCTGTCTCAAAAAAAAAAAAAAGAAAGAAAATCAGTTGTCTTAGTTTAAGCTACTATAACAAGGTACTGT
AGACTGATGGCTTATAAGCAACAGAAACTTATTTCTCAGTTCTGTAGTCTGGAGGTCCAAGATCAAGGTGACACTGTGGTCAGGTTCTGATGAGGGCCCT
CTTCTGGGTTATAAACTACGGACTTCTTGTATCCTTACATGGCAGAAAGAGCGACAGAGCTCTCTGTAGTCCCTTTTATAAGCTCACTAATCCCATTCAT
GAGGGCCCTACCCTCATGACCCAATTACCTCCCAAATGCCCCTCCTCCAAACACCACCACTTTGGGGGTTAAGATTTCAACAGATGAATTTTGAAGGGAC
ACAAACATTCAGTCCATAGCATCACTTATCAAGCTAGTATTTAATACCTCTTAGGCCCCGTGGAAGGGAAAATAGATAGGAACCTGCCCTGAAAGATGCT
TCAGTTGGGGAGAAAAGGTGAAATTCCATTGTTAGACAATTTGTTTAAGACAATACATCTTGCTTGAGAAGGAATAGAAGGGAAATGAAATGGGGGGAGG
GAGTGGTAGGAGATGGAGGCTTTGAAAGAAAATAACCAGATTTAGAAACATGGGTATAGAAAGCATCCTCCAGTACTTCTGTAACAATTTATCAAGACCT
ACAGGAAGTCAGTTTTGGATTTGCTCCTCCGAGATTTGCGAGCCAGAGGAAAATACTTAGACTATCAGGTTGGAAAGTTCACACTTGGACCAGGAAAAGA
CCAAGCAGTTGCTATAGTCTCCTGGATTGTGACTAATCTGGAGGAAGCAAGTCCCTGTATCCTTGGCAAAGCTTGAAAGGCAGGCAAATGTCTTCTCTGT
GTTTTCTGACAGGTGGTTGGGTGGTGGGGGTTGGTCTCTGTACCTCCTGTTCTTTACCTTGCTTACCAAGCCCTTCCACCGACTCACTCCTGCCTCCCCA
GCTAAAAATTGGCTGTGTTGCTTTTACCACAGTTACCAAGGTCTGAGTTTTATAAAATCCAGGATCACATCTGACCTCACCTGGTAGATATCTAGGCCAA
TAAAGTCTAAAGGGCTAAAAAGAAGGTACCTCTCCATCCTGTCTCCTCGAGGCCAGGCAGCACATGTGCAGTTAAGAGGCCTCCTGGATCCATTGTCCTC
CTGTTGCTTTTCGTTCTAAGTGATCCAAACTCTATTGCTGATAGGGAATAAAAGCAGGGCAGGCTAGTAGTGGGCAAGTGCTTTGATGGAGCGTATCTCC
AAGCAGGGCCCAAGTTTAGGAGGAGGAAGACCTGATACAATGAATGAACAGTGCGTCCTCCCAACCCAACCAAGAAGTGTAATTGTGTTCCGTCTTTAAC
CCTGGCATGGAATGGGGAGGGAAGAGGCATGGACATTTATTACATAGTGCACATTATCTACATTCTCTGCATGTGACCCAGATGTCAGCCCTTCCGCTTC
CTGCGAAGGTTACCTCTAATGCACGTTGCCCCAGGCCCTGCTGAGCTAGTTCCTCACCGCAGCTACTTAACTCACCATGAATTCCTAGAACCCTCAGCCT
CTGAGAGTGCTGGGATCTGGCGGGAGAACAGGCAGTACTTCCCTCACTAACCTACCCGCACGCCATACCATCATTGTGCAAAGCTGCCTCATGCTGGAAG
GTCTGGTTTACGTAAAAGTGACAAGTTGGAATTGAGCGTCCGACTCTCGGGTACCTGCCCCAGGCATTTCTCATCAGCCCCATTTCCCACACAGCTCTCT
CCTAGGCGCAGCCCTCCTTCACCACCACCACCCCCACCCCAATCACCTTTAGGTATTTTCTCCCCTAAAGCCTCACCTGTTGGCATTTTACATCTTTTTA
AGACCTTATTTTGTATTTTAAATGTATGAGAAAAATTATGGAGGATGATGCAAGATGAGTGAGTCCATAATGGTAATAATTGGACACTAAAAACAATGAA
AACTTGTCTCAAGTATTTGTGTTGAAATCTCAATTAACTGGGCGACTGCTCCCGTTCCATTTTATTCTGTAAAATATGTGGCATCCTTTGTGTTGAGGCG
GCATTTACTAAACACCCCCAAGGTGCAAGGCTGCAAGAGAATCGAGCGCCGCAAGGCGAGCTTATCTTCCACACCTGGTACAGTGCCCAGGACAGAGAAG
GTGTTTAGCAAGTTTCTGCTGAATGGAAGAGTGAGCGAGAAGGGAAAGTGCATCTAAAAAGCACAGGGAACCTACAAAATATTTGGGAAAGGGTTTCATC
AGTTCGGGTGAAATCTTGAACGTGCAAAGCACCATGGGGGTGGCTGGACAGGCTTGTTGGAGTCGTATAATGCAATGAATAAAAACTTACGGCTGCCTTA
AATGCAAATGTCAAGCCCTTAAATAAAATTTAACAAAGTC