Annotated gene sequence
Experiment = in vitro icSHAPE / NAI-N3
RefSeq = hg38
Cell = HEK293T
Original Data Reference = Cell. 2016;165(5):1267-1279.
stable secondary structure
loop
bulge/internal loop
no SHAPE data
coding sequence
CAGATAGGCGACACGCCGGCGGGCGGCTGAGGCGGGAATGGCTGCTGTACTGCAGCGCGTCGAGCGGCTGTCCAATCGAGTCGTGCGTGTGTTGGGCTGT
AACCCGGGTCCCATGACCCTCCAAGGCACCAACACCTACCTAGTGGGGACCGGCCCCAGGAGAATCCTCATTGACACTGGAGAACCAGCAATTCCAGAAT
ACATCAGCTGTTTAAAGCAGGCTCTAACTGAATTTAACACAGCAATCCAGGAAATTGTAGTGACTCACTGGCACCGAGATCATTCTGGAGGCATAGGAGA
TATTTGTAAAAGCATCAATAATGACACTACCTATTGCATTAAAAAACTCCCACGGAATCCTCAGAGAGAAGAAATTATAGGAAATGGAGAGCAACAATAT
GTTTATCTGAAAGATGGAGATGTGATTAAGACTGAGGGAGCCACTCTAAGAGTTCTATATACCCCTGGCCACACTGATGATCACATGGCTCTACTCTTAG
AAGAGGAAAATGCTATCTTTTCTGGAGATTGCATCCTAGGGGAAGGAACAACGGTATTTGAAGACCTCTATGATTATATGAACTCTTTAAAAGAGTTATT
GAAAATCAAAGCTGATATTATATATCCAGGACATGGCCCAGTAATTCATAATGCTGAAGCTAAAATTCAACAATACATTTCTCACAGAAATATTCGAGAG
CAGCAAATTCTTACATTATTTCGTGAGAACTTTGAGAAATCATTTACAGTAATGGAGCTTGTAAAAATTATTTACAAGAATACTCCTGAGAATTTACATG
AAATGGCTAAACATAATCTCTTACTTCATTTGAAAAAACTAGAAAAAGAAGGAAAAATATTTAGCAACACAGATCCTGACAAGAAATGGAAAGCTCATCT
TTAGTTTCAGATTAAAGAAAGCTTTGTTTTATTTTGCTTTCAGAGAATGGTATGTTTTCTTAACTATAGGTTATTTTATAGAGAATATAAAAGTATAAAA
CATTAAAAATAACCCTAGATATACTTTAAAATAATGTTATATTTATGCTAAAATATGTAAATTACACTATACAACCATATGATAGGTTATTTCTCTAACC
TTGTCTTCTAACGTTTTACCAAAAATTCATAATCTAATAGTTTATCAGTTTTCAATAGATTAAATAAAATGATTACTTTAAAAATAATAAAATTTATCTA
ATTTAAAGTTGATATTATTTTTGGCCGTTAGTTATCTATTACTAGTGATCAGTTATACTGTTTTCTATAGCTACTTTATTTAACAGCACAGATTTCTATG
CACCTTTACTCTTTCCTCAACCCTTGTCTCTATCTGTACATAATTGCTTTGTCTTGATGTTTCTATCAACTATATCATGACTATCTATTGGTTCCATAAC
TCTGTATCATGTGTATTTTCTTATTCTGGTATACCACAAATGATTCATGCAAATGAATTTTTGGTGATTGAAAAATATTAAATTCCCAATTTAAAGTATT
ATATGATA